Been a while since I harvested Phacelia seed, but if I were doing it today, I would:
Wait until the plants were dried down in the field, or starting to shatter, whichever comes first.
Pick the plants and beat them against the inside of a garbage can to release the seeds. Better yet, cut them off just above ground level so as to not introduce dirt clods into the seed.
Shake the garbage can to settle seeds to the bottom.
Rake off the bigger stems and pieces.
(Optionally dump onto a screen with big
enough holes to pass the seeds and retain the chaff.)
Winnow.