Assuming you bought some 3ft trees and they grow another 1ft this year.
You can build your swale on contour 4ft or more away from the trees this fall or next spring when you have more money and time.
All without damaging the tree root. Just be careful not to add dirt to the 4ft dripline of the plants.
I would recommend building a few 5ft deep ponds at a few of those wet spots.
You could drain the excess water from the
land into the pond(s) with some drainage ditch/swale.
You also mentioned that you want to build some huglekulture.
It is not a good idea to plant trees in huglekulture, except maybe 2ft shurbs like rosemary or dwarf blueberry.
This is due to the fact that huglekulture sink/settles
alot esp the 1st two years.
Huglekulture does work miracles for annuals those.